$scaffold and bake don't match up

I am new to cakephp and I used the scaffolding and then decided to
bake my views and controllers. I have some Associations setup that
showed up in the views when using scaffolding but don't show up after
baking the views. Did I do something wrong or is there not a way to
generate the scaffolding as it appears? Thanks any help would be
appreciated. Thanks.

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